I’m working with the v2.1.1 VCF, and am trying to filter out the cancer vs non-cancer subset, similar to how you can choose between data sets in the browser. For the exomes, I was able to compare the AC and non_cancer_AC INFO fields to make the subset, but for the genomes data, it doesn’t look like there is anything to filter on? There are fields for non-neuro, non-topmen, controls, but nothing for cancer. Am I missing something?
Hi,
For gnomAD v2, there is only a non-cancer subset for the exomes because all the genomes are non-cancer.
Awesome, many thanks!