For the GRCh38 v4 Copy number variants, can we get BED files similar to what was provided for the v4 Structural variants Downloads?
Just responding here to let you know we’ve logged this feature request – the CNV team is working on this and will plan to release as soon as we can.
Great! Thank you. Do you know the timeline for when the BED files may become available?
The v4.1 CNV BED files are now available for download from GCP but not are available yet in AWS or Azure. The team will adding links to the Downloads page in the near future, but for now, here are the links to download them from GCP:
- https://storage.googleapis.com/gcp-public-data–gnomad/release/4.1/exome_cnv/gnomad.v4.1.cnv.all.bed
- https://storage.googleapis.com/gcp-public-data–gnomad/release/4.1/exome_cnv/gnomad.v4.1.cnv.non_neuro.bed
- https://storage.googleapis.com/gcp-public-data–gnomad/release/4.1/exome_cnv/gnomad.v4.1.cnv.non_neuro_controls.bed
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