Hi! When looking up variants in the browser to annotate my own variants, is it recommended to only consider SVs of a minimum Quality score (ex: ignore SVs with quality score = 1)?
I cannot find this information in the documentation. Thank you in advance!
Hi @ocg, thanks for your interest in the gnomAD SVs! We recommend referring to the FILTER status for this - variants with a PASS filter status are considered high quality. By default, variants displayed in the browser are restricted to PASS variants; this can be toggled by clicking “Include filtered variants.” We limited to PASS variants when performing our quality analysis which are described in the gnomAD SV v4 blog post.