Integer overflow in exomes chrY v4.0?

General
1

Hi, consider pos chrY:2786709.

Here, nhomalt_XX looks like an integer overflow / -1?

chrY    2786709 .       G       T       .       AC0     AC=0;AN=87312;AF=0.00000;nhomalt_XX=2147483647
2

Hi @Manuel_Holtgrewe ,

Thank you for bringing this to our attention! XX groupings should not have values on chrY, so this is a bug and it will be fixed in our v4.1 release.

Thanks again!
Mike