Hello all! For the gnomAD v4 Hail Table, the freq row field contains the index for all exomes that are adjusted (adj) or raw. Can I please know the difference between these two values?
Thank you very much!
“adj” refers to allele frequency information after filtering to only high quality genotypes, which we define as:
GQ>=20
DP>=10 (5 for haploid genotypes on sex chromosomes)
allele balance >= 0.2 for heterozygotes
Regards,
Kristen
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