Hi there,
in the browser I was able to get the ancestry specific aggregated info (e.g. AF, AN, AC) for a specific variant. However, I would be interested in knowing the aggregated info (e.g. AF, AN & AC) for specific haplotypes/combination of variants for each ancestry. Is there a method/tool that I could get such info?
Thank you!
Hi @Mingzhou_Fu,
If you would like to see if two variants occur on the same haplotypes in gnomAD, you could use our variant co-occurrence tool. However that is only available for v2 (GRCh37) at the moment. You can read more on how we generate this data here.
We do not release a haplotype/phased dataset or any tool that would allow you to gather the information you seek for more than two variants at a time from our release HT.
Best,
Mike