I have observed that in the VCF files available for download, the gnomAD variant ID that is seen on the website is not being displayed in the VCF. Why is it not included in the vcf?
Hi Anoksha,
The variant ID is added during the browser’s data pipeline step.
This is the relevant hail function.
Note you can get the variant ID from our API. Here is an example query by gene.
Hello Matt,
Thank you for the response. I have gone through the code and understood how the variant_ID’s are being displayed. Would it be possible to get a downloadable format of all the variant_ID’s displayed in gnomAD?