The md5sums listed for both the exomes and genomes v4.1.1 variants files are instead the md5sums for the v4.1 files. Can I get verification that the links are correct to the v4.1.1 files and have the updated m5sums built into that page so I can verify my downloads?
Hello,
Thanks for reporting this, and our apologies for not having caught this. The files listed on the data page are the correct gnomad v4.1.1 variant downloads, but the checksums are indeed outdated. I’ll open a PR shortly and have that change into production within the next ~day, but for now to unblock you, here are the correct checksums for the VCFs:
Exomes:
{ chrom: ‘1’, size: “17.56 GiB”, md5: “2e08659636b631c38dae62c79553bc65” },
{ chrom: ‘2’, size: “13.35 GiB”, md5: “ec198762f8cb807ac6871de00c157dec” },
{ chrom: ‘3’, size: “10.83 GiB”, md5: “aec7d7e4300b719e345fa69dfaf6538e” },
{ chrom: ‘4’, size: “7.21 GiB”, md5: “fc436e1ae0de3d6fd134efd584959d8a” },
{ chrom: ‘5’, size: “7.94 GiB”, md5: “d13df61b30bf5009565890be990727cf” },
{ chrom: ‘6’, size: “8.54 GiB”, md5: “cdc8f1a61497cf5fc6b77e935c84e02c” },
{ chrom: ‘7’, size: “9.04 GiB”, md5: “b12707e3fcf2b57193c9038153b3843b” },
{ chrom: ‘8’, size: “6.8 GiB”, md5: “5eeab891ab132801c9f8da1f4967c02f” },
{ chrom: ‘9’, size: “7.52 GiB”, md5: “4d2a672b96f7898ba41ace82b7f3b705” },
{ chrom: ‘10’, size: “7.35 GiB”, md5: “82779ca0a54f6906511c939199a975be” },
{ chrom: ‘11’, size: “10.88 GiB”, md5: “c03170a93d0877bfd097f5979350ada3” },
{ chrom: ‘12’, size: “9.94 GiB”, md5: “375e39ff8f59f13eea20846ca8f47ee8” },
{ chrom: ‘13’, size: “3.31 GiB”, md5: “147de89a0b62789886aa8ba949dfac09” },
{ chrom: ‘14’, size: “6.23 GiB”, md5: “330dae70fc6c26031c02ab4f4d0e05b9” },
{ chrom: ‘15’, size: “6.89 GiB”, md5: “4ac058ec1ea74a523e4faf9f2082cb5f” },
{ chrom: ‘16’, size: “9.14 GiB”, md5: “bc776c8cbf2352ed4eede17d6cbff567” },
{ chrom: ‘17’, size: “11.23 GiB”, md5: “a929e8043e0719fecb4b72245cc2a490” },
{ chrom: ‘18’, size: “3.17 GiB”, md5: “71e0e6fc629e3f8dc7a0c6cadcd8b612” },
{ chrom: ‘19’, size: “11.8 GiB”, md5: “bfffbc0986c81b2d08acf508502ce112” },
{ chrom: ‘20’, size: “4.45 GiB”, md5: “14f01ad046abd41d8ba542a38bead27b” },
{ chrom: ‘21’, size: “2.1 GiB”, md5: “f8b112938d68ea61c9dcc4ba26e09ef1” },
{ chrom: ‘22’, size: “4.73 GiB”, md5: “4543f706701bc746bf291884fd277934” },
{ chrom: ‘X’, size: “5.43 GiB”, md5: “7e1df7f412ae48b8f8a8a2c71df173b6” },
{ chrom: ‘Y’, size: “108.72 MiB”, md5: “d541c53ca6551434fbd55c3bdf3e2486” }
Genomes:
{ chrom: ‘1’, size: “41.25 GiB”, md5: “21939573565c47e54edaf3c8a9bf50f3” },
{ chrom: ‘2’, size: “43.57 GiB”, md5: “3211b86b12fa71c187914fc5161eb037” },
{ chrom: ‘3’, size: “36.73 GiB”, md5: “26bd6279907cf7d8c4af7d64ca2aaf51” },
{ chrom: ‘4’, size: “33.71 GiB”, md5: “b34adf5d22bf3e4cef2ed7d90c7abff3” },
{ chrom: ‘5’, size: “30.6 GiB”, md5: “5e4669f942d647a3274bab54e729288e” },
{ chrom: ‘6’, size: “29.74 GiB”, md5: “b78e1717d6b79101ae188ef5e587de84” },
{ chrom: ‘7’, size: “29.24 GiB”, md5: “2948b4e3fded433dcf59cf5d4e2e40e9” },
{ chrom: ‘8’, size: “27.41 GiB”, md5: “7e0f96ede0cab3d431bcb61bdd50b5bd” },
{ chrom: ‘9’, size: “23.17 GiB”, md5: “6683e973b5931fe30a059ea157644b07” },
{ chrom: ‘10’, size: “25.12 GiB”, md5: “eafd6ae544ce6d2e54e103a8516e9dba” },
{ chrom: ‘11’, size: “24.7 GiB”, md5: “c7d1ddeb1b2da2c74c3e0bdec91307f5” },
{ chrom: ‘12’, size: “24.28 GiB”, md5: “2c7adf6e982838fa692ce7716d55e17a” },
{ chrom: ‘13’, size: “16.0 GiB”, md5: “de54f559704bf06abbc3f413ba561923” },
{ chrom: ‘14’, size: “16.71 GiB”, md5: “6471ff6deec38d5e04a9479fa9b587b8” },
{ chrom: ‘15’, size: “15.82 GiB”, md5: “bb966d401f1b43954aeec2b55acce917” },
{ chrom: ‘16’, size: “17.7 GiB”, md5: “311fe5c98d585a7bcb03a5560bcb80b3” },
{ chrom: ‘17’, size: “16.3 GiB”, md5: “08776a899230bc9cadf8250da87aec4b” },
{ chrom: ‘18’, size: “13.5 GiB”, md5: “a5afa2140f64c8ea45bd9caaad9d9559” },
{ chrom: ‘19’, size: “12.8 GiB”, md5: “f5420e0cdce4e33a9644296b93313e3b” },
{ chrom: ‘20’, size: “11.08 GiB”, md5: “49f1f7ffc17d5c45aa5a5cd18731d2ff” },
{ chrom: ‘21’, size: “7.26 GiB”, md5: “bd088f86e1924a9702c5ba5dc5e16053” },
{ chrom: ‘22’, size: “8.17 GiB”, md5: “8018e6e02b9bf7ec97c3367928c7e105” },
{ chrom: ‘X’, size: “21.36 GiB”, md5: “2d0515434ddceef8a6d5e48199b76e91” },
{ chrom: ‘Y’, size: “573.63 MiB”, md5: “853a50d5462b4bcf904b0ffd6f052baa” }
Let us know if you notice or need anything further.
Best,
Riley
Awesome many thanks!